Find RNA-seq data for a disease of your choice with N number of patients 2. Write your detailed method to perform RNA expression analysis (G) for each person in your RNA-Seq dataset. 3. Write your detailed method to perform variant call analysis (S) for each subject in your RNA-Seq data set 4. Search for GGTools from Bioconductor 5. Use the manual and the system.file data to: 1. Compute score tests for all SNP cis to genes, with flexible filtering (page 4) 2. Appraise the eQTL prediction models (page 6) 3. Collect genewise best scoring eQTL (page 9) 4. collect strongest trans SNP-gene associations in a buffer of size K genes per SNP (page 12) 5. bind testing metadata to a best.cis.eQTLs result (page 14) 6. test for variant-expression associations in cis, using VCF (page 16) 7. Compute FDRs for various filterings/results (page 22) 6. Write up your codes from step 5 sections 1 – 7 7. Combine the methods in steps 1 – 3, and 6 into a workflow for A3